Andrzej Kloczkowski, PhD :: Nationwide Children's Hospital, Columbus, Ohio

Andrzej Kloczkowski, PhD

Andrzej  Kloczkowski, PhD

Contact Information

The Research Institute at Nationwide Children's Hospital
700 Children's Drive
Columbus, Ohio 43205 [ map ]
PH: (614) 355-5622
E-mail Me

Biography

Andrzej Kloczkowski is Principal Investigator in the Battelle Center for Mathematical Medicine of The Research Institute at Nationwide Children’s Hospital. He is a Professor of Pediatrics at The Ohio State University College of Medicine. Dr. Kloczkowski’s NIH-funded research program focuses on computational structural biology and bioinformatics, including protein structure prediction from the amino acid sequence, prediction of biomacromolecular dynamics using elastic network models, development of coarse grained models and potentials for proteins and nucleic acids, and studies of protein-protein and protein-nucleic acid integrations. He is also interested in application of machine learning methods to various biomedical and clinical problems, and has ongoing collaboration with several experimental and clinical centers.

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Languages Spoken:

  • English

Research Interests

Research Center:

Areas of Interest:

  • Dr. Kloczkowski applies statistical mechanics, polymer physics and computer modeling of physicochemical system to a variety of problems that are important for molecular biology and medicine. Much of his work is driven by NIH funding to study “High-Accuracy Protein Models Derived from Lower Resolution Data.” Previous work has focused on lattice models of proteins used to study the physical nature of protein folding, prediction of protein structures from the amino acid sequence, prediction of the 3D structure of human telomerase, protein dynamics, prediction of protein function, protein packing and statistical potentials, systems biology and relating phosphorylation of protein domains to signaling and metabolic pathways with an emphasis on cancer. Dr. Kloczkowski directs his work toward highly complex biological problems, especially those important in medicine such as phosphorylation and other post-translational modifications, systems biology and modeling of cells.

Education and Training

Graduate School

  • Warsaw University
    Date Completed: 06/30/1974

Medical School

  • Institute of Physical Chemistry of the Polish Academy of Sciences
    Date Completed: 06/30/1981

Post Doctoral

  • Stanford University
    Date Completed: 06/30/1983

Post Doctoral

  • Warsaw University
    Date Completed: 06/30/2001

Professional Experience

2010–present

  • Principal Investigator, Battelle Center for Mathematical Medicine, The Research Institute at Nationwide Children's Hospital

2007–2010

  • Scientist II, Baker Center for Bioinformatics and Biological Statistics, Iowa State University

2005–2010

  • Adjunct (Full) Professor, Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University

2002–2007

  • Scientist I, Baker Center for Bioinformatics and Biological Statistics, Iowa State University

Publications

  • Gniewek,Pawel; Kolinski,Andrzej; Kloczkowski,Andrzej; Gront,Dominik. 2014. BioShell-Threading: versatile Monte Carlo package for protein 3D threading.  BMC bioinformatics. Vol. 15, no. 1. (January): e22.
  • Gniewek P, Kolinski A, Kloczkowski A, Gront D. 2014. BioShell-Threading: versatile Monte Carlo package for protein 3D threading.  BMC Bioinformatics. Vol. 1, no. January: e22.
  • Saraswathi,S; Fernandez-Martinez,J,L; Kolinski,A; Jernigan,R,L; Kloczkowski,A. 2013. Distributions of amino acids suggest that certain residue types more effectively determine protein secondary structure.  JOURNAL OF MOLECULAR MODELING. Vol. 19, no. 10. (October): 4337-4348.
  • Faraggi E, Kloczkowski A. 2013. A global machine learning based scoring function for protein structure prediction.  Proteins. Vol. Epub ahead of print, no. October: e24454.
  • Saraswathi, S., Mahanand, B.S., Kloczkowski, A., Suresh, S., and Sundararajan, N. 2013. Detection of onset of Alzheimer's Disease from MRI images Using a GA-PSO-ELM Classifier. In 2013 IEEE Fourth International Workshop on Computational Intelligence in Medical Imaging (IEEE CIMI 2013)
  • Flatow D, Leelananda SP, Skliros A, Kloczkowski A, Jernigan RL. 2013. Volumes and Surface Areas: Geometries and Scaling Relationships Between Coarse-Grained and Atomic Structures.  Current Pharmacy Design. Vol. Epub ahead of print, no. May: e47.
  • Motawea,Hanaa,KB; Jeyaraj,Selvi,C; Pawlowski,Marcin; Kloczkowski,Andrzej; Chotani,Maqsood,A. 2013. Cyclic AMP-Rap1A signaling mediates cell surface translocation of microvascular smooth muscle alpha(2C)adrenoceptors through the actin binding protein filamin-2. In Joint Annual Meeting of the ASPET/BPS at Experimental Biology (EB)
  • Pawlowski,Marcin; Kloczkowski,Andrzej. 2013. MQAPmulti2 and MQAPsingle2:Toward the Estimation of Model Quality When Not Only Many Models are Available. In 57th Annual Meeting of the Biophysical-Society
  • Kloczkowski,Andrzej; Gniewek,Pawel; Faraggi,Eshel; Zimmermann,Michael; Gront,Dominik; Pawlowski,Marcin; Jernigan,Robert,L; Kolinski,Andrzej. 2013. New Methods to Improve Protein Structure Prediction and Refinement. In 57th Annual Meeting of the Biophysical-Society
  • Gront,Dominik; Kloczkowski,Andrzej. 2013. De Novo Protein Structure Determination from Incomplete Experimental Data. In 57th Annual Meeting of the Biophysical-Society
  • Saraswathi, S.; Fernandez-Martinez, J.L.; Kolinski A.; Jernigan, R.L.; Kloczkowski, A. 2012. Fast Learning Optimized Prediction Methodology (FLOPRED) for Protein Secondary Structure Prediction.  Journal of Molecular Modeling. Vol. 18, no. 9. (September): 4275-89.
  • Kloczkowski,Andrzej; Gniewek,Pawel; Kolinski,Andrzej; Jernigan,Robert. 2012. The Effects of Noise in Force Fields and Elastic Network Normal Modes on Protein Structure Refinement. In 26th Annual Symposium of the Protein-Society
  • Kloczkowski,Andrzej; Gniewek,Pawel; Kolinski,Andrzej; Jernigan,Robert. 2012. The Effects of Noise in Force Fields and Elastic Network Normal Modes on Protein Structure Refinement. In 26th Annual Symposium of the Protein-Society
  • Zimmermann,Michael,T; Leelananda,Sumudu,P; Kloczkowski,Andrzej; Jernigan,Robert,L. 2012. Combining statistical potentials with dynamics-based entropies improves selection from protein decoys and docking poses.  Journal of Physical Chemistry. B. Vol. 116, no. 23. (June): 6725-6731.
  • Huang, Y., Bonnet, S., Kloczkowski, A., Jernigan, R.L., and Wu, Z. 2012. P.R.E.S.S. - An R-package for Exploring Residual-Level Protein Structural Statistics.  Journal of Bioinformatics and Computational Biology. Vol. 10, no. 3. (June): e21.
  • Gniewek, P.; Kolinski, A.; Jernigan, R.L.; Kloczkowski, A. 2012. Elastic network normal modes provide a basis for protein structure refinement.  Journal of Chemical Physics. Vol. 136, no. May: e195101.
  • Gniewek,Pawel; Kolinski,Andrzej; Jernigan,Robert,L; Kloczkowski,Andrzej. 2012. How noise in force fields can affect the structural refinement of protein models?.  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. Vol. 80, no. 2. (February): 335-341.
  • Skliros,Aris; Zimmermann,Michael,T; Chakraborty,Debkanta; Saraswathi,Saras; Katebi,Ataur,R; Leelananda,Sumudu,P; Kloczkowski,Andrzej; Jernigan,Robert,L. 2012. The importance of slow motions for protein functional loops.  PHYSICAL BIOLOGY. Vol. 9, no. 1. (February): e014001.
  • Huang, Y.; Bonnet, S.; Kloczkowski, A.; Jernigan, R.L.; Wu, Z. 2011. P.R.E.S.S. - An R-package for Exploring Residual-Level Protein Structural Statistics. In IEEE International Conference on Bioinformatics and Biomedicine Workshops, (BIBMW 2011), Atlanta, GA, Nov 12-15, 2011
  • Zimmermann,Michael,T; Leelananda,Sumudu,P; Gniewek,Pawel; Feng,Yaping; Jernigan,Robert,L; Kloczkowski,Andrzej. 2011. Free energies for coarse-grained proteins by integrating multibody statistical contact potentials with entropies from elastic network models.  Journal of Structural and Functional Genomics. Vol. 12, no. 2. (July): 137-147.
  • Fernández-Martínez, J.L.; García-Gonzalo, E.; Saraswathi, S.; Jernigan, R.L.; Kloczkowski, A. 2011. Particle Swarm Optimization: A Powerful Family of Stochastic Optimizers. Analysis, Design and Application to Inverse Modelling. In Advances in Swarm Intelligence, Part 1; Lecture Notes in Computer Science, Vol. 6728. Edited by Tan, Y.; Shi, Y.. Heidelberg: Springer Verlag.
  • Huang,Yuanyuan; Bonett,Stephen; Kloczkowski,Andrzej; Jernigan,Robert; Wu,Zhijun. 2011. Statistical measures on residue-level protein structural properties.  Journal of Structural and Functional Genomics. Vol. 12, no. 2. (July): 119-136.
  • Leelananda,Sumudu,P; Towfic,Fadi; Jernigan,Robert,L; Kloczkowski,Andrzej. 2011. Exploration of the relationship between topology and designability of conformations.  JOURNAL OF CHEMICAL PHYSICS. Vol. 134, no. 23. (June): e235101.
  • Gniewek,Pawel; Leelananda,Sumudu,P; Kolinski,Andrzej; Jernigan,Robert,L; Kloczkowski,Andrzej. 2011. Multibody coarse-grained potentials for native structure recognition and quality assessment of protein models.  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. Vol. 79, no. 6. (June): 1923-1929.
  • Zimmermann,Michael,T; Kloczkowski,Andrzej; Jernigan,Robert,L. 2011. MAVENs: Motion analysis and visualization of elastic networks and structural ensembles.  BMC BIOINFORMATICS. Vol. 12, no. June: e264.
  • Steczkiewicz,Kamil; Zimmermann,Michael,T; Kurcinski,Mateusz; Lewis,Benjamin,A; Dobbs,Drena; Kloczkowski,Andrzej; Jernigan,Robert,L; Kolinski,Andrzej; Ginalski,Krzysztof. 2011. Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step.  PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. Vol. 108, no. 23. (June): 9443-9448.
  • Zimmermann,Michael,T; Skliros,Aris; Kloczkowski,Andrzej; Jernigan,Robert,L. 2011. Immunoglobulin Structure Exhibits Control over CDR Motion.  Immunome research. Vol. 7, no. 2. (January): e18.
  • Saraswathi, S.; Jernigan, R.L.; Kloczkowski, A.; Kolinski A. 2010. Protein secondary structure prediction using knowledge-based potentials. In International Conference on Neural Computation, ICNC 2010 and of the International Conference on Fuzzy Computation, ICFC 2010;Valencia;24 October 2010through26 October 2010
  • Saraswathi, S.; Kloczkowski, A.; Jernigan, R.L. 2010. An Extreme Learning Machine Classifier for Prediction of Relative Solvent Accessibility in Proteins. In International Conference on Fuzzy Computation and 2nd International Conference on Neural Computation
  • Zimmermann, M.T.; Skliros, A.; Saraswathi, S.; Kloczkowski, A.; Jernigan, R.L. 2010. Immunoglobulin functional motions and their effects on the complementarity determining region. In First ACM International Conference on Bioinformatics and Computational Biology (ACM-BCB 2010)
  • Katebi, A.; Gniewek, P.; Zimmermann, M.; Saraswathi, S.; Gong, Z.; Tuggle, C.K.; Kloczkowski, A.; Jernigan, R.L. 2010. Immunological Implications of Structural Analysis of Two Different Porcine IL1Beta Proteins Expressed in Macrophages and Embryos. In The First ACM International Conference on Bioinformatics and Computational Biology (ACM-BCB 2010), Niagara Falls, NY, August 2-4, 2010,
  • Leelananda, S.P.; Feng, Y.P.; Gniewek, P.; Kloczkowski A.; Jernigan, R.L. 2010. Statistical Contact Potentials in Protein Coarse-Grained Modeling: From Pair to Multi-Body Potentials. In Multiscale Approaches to Protein Modeling. Edited by Kolinski, A.. Heidelberg: Springer Verlag.
  • Skliros,Aris; Jernigan,Robert,L; Kloczkowski,Andrzej. 2010. Models To Approximate the Motions of Protein Loops.  JOURNAL OF CHEMICAL THEORY AND COMPUTATION. Vol. 6, no. 10. (October): 3249-3258.
  • Katebi,Ataur,R; Kloczkowski,Andrzej; Jernigan,Robert,L. 2010. Structural interpretation of protein-protein interaction network. In 3rd Computational Structural Bioinformatics Workshop
  • Katebi, A.; Kloczkowski, A.; Jernigan, R.L. 2010. Structural Interpretation of Protein-Protein Interaction Network.  BMC Structural Biology. Vol. 10 (Suppl 1), no. May: eS4.
  • Feng,Yaping; Kloczkowski,Andrzej; Jernigan,Robert,L. 2010. Potentials 'R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials.  BMC BIOINFORMATICS. Vol. 11, no. February: e92.
  • Cheng,Haitao; Sen,Taner,Z; Jernigan,Robert,L; Kloczkowski,Andrzej. 2010. Data Mining for Protein Secondary Structure Prediction.  DATA MINING IN CRYSTALLOGRAPHY. Vol. 134, no. January: 135-167.
  • Zimmermann,Michael; Towfic,Fadi; Jernigan,Robert,L; Kloczkowski,Andrzej. 2009. Short paths in protein structure space originate in graph structure.  PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. Vol. 106, no. 51. (December): E137-E137.
  • Skliros,Aris; Mark,James,E; Kloczkowski,Andrzej. 2009. Small-Angle Neutron Scattering from Elastomeric Networks in which the Junctions Alternate Regularly in their Functionality.  MACROMOLECULAR THEORY AND SIMULATIONS. Vol. 18, no. 9. (December): 537-544.
  • Feng,Yaping; Yang,Lei; Kloczkowski,Andrzej; Jernigan,Robert,L. 2009. The energy profiles of atomic conformational transition intermediates of adenylate kinase.  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. Vol. 77, no. 3. (November): 551-558.
  • Gold, D.G.; Miller, W.G.; Sen, T.Z.; Kloczkowski, A. 2009. Polyglycine. In Polymer Data Handbook. 2nd ed. Edited by Mark, J.E.. New York, NY: Oxford University Press.
  • Gold, D.G.; Miller, W.G.; Sen, T.Z.; Kloczkowski, A. 2009. Poly(L-alanine). In Polymer Data Handbook. 2nd ed. Edited by Mark, J.E.. New York, NY: Oxford University Press.
  • Andrady, A.L.; Kloczkowski, A.; Sen, T.Z.; Ahunbay, M.G. 2009. Poly(vinylidene Chloride). In Polymer Data Handbook. 2nd ed. Edited by Mark, J.E.. New York, NY: Oxford University Press.
  • Gold, D.G.; Miller, W.G.; Sen, T.Z; Kloczkowski, A. 2009. Poly(gamma-benzyl-L-glutamate). In Polymer Data Handbook. 2nd ed. Edited by Mark, J.E.. New York, NY: Oxford University Press.
  • Mark, J.E.; Sen, T.Z.; Kloczkowski, A. 2009. Some Monte Carlo Simulations of Nanoparticle Reinforcement of Elastomers. In Nano- and Micro-Mechanics of Polymer Blends and Composites. Edited by Karger-Kocsis, J.; Fakirov, S.. Munich: Hanser Publications.
  • Kloczkowski,Andrzej; Jernigan,Robert,L; Wu,Zhijun; Song,Guang; Yang,Lei; Kolinski,Andrzej; Pokarowski,Piotr. 2009. Distance matrix-based approach to protein structure prediction.  Journal of structural and functional genomics. Vol. 10, no. 1. (March): 67-81.
  • Skliros,Aris; Mark,James,E; Kloczkowski,Andrzej. 2009. Chain dimensions and fluctuations in elastomeric networks in which the junctions alternate regularly in their functionality.  JOURNAL OF CHEMICAL PHYSICS. Vol. 130, no. 6. (February): e064905.
  • Katebi,Ataur,R; Kloczkowski,Andrzej; Jernigan,Robert,L. 2009. Computational Testing of Protein-Protein Interactions. In IEEE International Conference on Bioinformatics and Biomedicine (BIBMW 2009)
  • Kurkcuoglu,Ozge; Doruker,Pemra; Sen,Taner,Z; Kloczkowski,Andrzej; Jernigan,Robert,L. 2008. The ribosome structure controls and directs mRNA entry, translocation and exit dynamics.  PHYSICAL BIOLOGY. Vol. 5, no. 4. (December): e046005.
  • Feng,Yaping; Jernigan,Robert,L; Kloczkowski,Andrzej. 2008. Orientational distributions of contact clusters in proteins closely resemble those of an icosahedron.  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. Vol. 73, no. 3. (November): 730-741.
  • Peto,Myron; Kloczkowski,Andrzej; Honavar,Vasant; Jernigan,Robert,L. 2008. Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable.  BMC BIOINFORMATICS. Vol. 9, no. November: e487.
  • Yan,Aimin; Wang,Yongmei; Kloczkowski,Andrzej; Jernigan,Robert,L. 2008. Effects of Protein Subunits Removal on the Computed Motions of Partial 30S Structures of the Ribosome.  JOURNAL OF CHEMICAL THEORY AND COMPUTATION. Vol. 4, no. 10. (October): 1757-1767.
  • Kloczkowski, A.; Jernigan, R.L. 2008. Book Review of Molecular Modeling of Proteins. Methods in Molecular Biology, 443.  Journal of the American Chemical Society. Vol. 130, no. 37. (August): e12548–12548.
  • Sen,Taner,Z; Kloster,Margaret; Jernigan,Robert,L; Kolinski,Andrzej; Bujnicki,Janusz,M; Kloczkowski,Andrzej. 2008. Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA.  BIOPHYSICAL JOURNAL. Vol. 94, no. 7. (April): 2482-2491.
  • Sulkowska,Joanna,I; Kloczkowski,Andrzej; Sen,Taner,Z; Cieplak,Marek; Jernigan,Robert,L. 2008. Predicting the order in which contacts are broken during single molecule protein stretching experiments.  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. Vol. 71, no. 1. (April): 45-60.
  • Yan,Aimin; Kloczkowski,Andrzej; Hofmann,Heike; Jernigan,Robert,L. 2007. Prediction of side chain Orientations in proteins by statistical machine learning methods.  JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. Vol. 25, no. 3. (December): 275-287.
  • Pokarowski,Piotr; Kloczkowski,Andrzej; Nowakowski,Szymon; Pokarowska,Maria; Jernigan,Robert,L; Kolinski,Andrzej. 2007. Ideal amino acid exchange forms for approximating substitution matrices.  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. Vol. 69, no. 2. (November): 379-393.
  • Cheng,Haitao; Sen,Taner,Z; Jernigan,Robert,L; Kloczkowski,Andrzej. 2007. Consensus data mining (CDM) protein secondary structure prediction server: Combining GOR v and fragment database mining (FDM).  BIOINFORMATICS. Vol. 23, no. 19. (October): 2628-2630.
  • Peto,Myron; Sen,Taner,Z; Jernigan,Robert,L; Kloczkowski,Andrzej. 2007. Generation and enumeration of compact conformations on the two-dimensional triangular and three-dimensional fcc lattices.  JOURNAL OF CHEMICAL PHYSICS. Vol. 127, no. 4. (July): e044101.
  • Peto,Myron; Kloczkowski,Andrzej; Jernigan,Robert,L. 2007. Shape-dependent designability studies of lattice proteins. In Workshop on Structure and Function of Biomolecules II
  • Feng,Yaping; Kloczkowski,Andrzej; Jernigan,Robert,L. 2007. Four-body contact potentials derived from two protein datasets to discriminate native structures from decoys.  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. Vol. 68, no. 1. (July): 57-66.
  • Peto, M.; Kloczkowski, A.; Jernigan, R.L. 2007. Shape-dependent designability studies of lattice proteins.  Journal of Physics - Condensed Matter. Vol. 19, no. 28. (July): e285220.
  • Sen,Taner,Z; Kloster,Margaret; Kloczkowski,Andrzej; Kolinski,Andrzej; Bujnicki,Janusz,M; Jernigan,Robert,L. 2007. Structure prediction combined with the normal mode analysis reveals the functional mechanisms of the outer membrane transporter and signal transducer FecA. In 51st Annual Meeting of the Biophysical-Society
  • Mark, J.E.; Abou-Hussein, R.; Sen, T.Z.; Kloczkowski, A. 2007. Monte Carlo Simulations on Nanoparticles in Elastomers. Effects of the Particles on the Dimensions of the PolymerChains and the Mechanical Properties of the Networks.  Macromolecular Symposia. Vol. 256, no. January: 40-47.
  • Mark,James,E; Abou-Hussein,Reda; Sen,Taner,Z; Kloczkowski,Andrzej. 2007. Monte Carlo simulations on nanoparticles in elastomers. Effects of the particles on the dimensions of the polymer chains and the mechanical properties of the networks. In 18th Polymer-Networks-Group Meeting
  • Feng,Yaping; Kloczkowski,Andrzej; Jernigan,Robert,L. 2007. New four-body protein potentials for improved threading. In 51st Annual Meeting of the Biophysical-Society
  • Kloczkowski, A.; Sen, T.Z. 2007. Magnetic, Piezoelectric, Pyroelectric and Ferroelectric Properties of Synthetic and Biological Polymers. In Physical Properties of Polymers Handbook. 2nd ed. Edited by Mark, J.E.. New York, NY: Springer Verlag.
  • Jernigan,Robert,L; Kloczkowski,Andrzej. 2007. Packing regularities in biological structures relate to their dynamics.  Methods in molecular biology (Clifton, N.J.). Vol. 350, no. January: 251-276.
  • Kloczkowski, A.; Kolinski, A. 2007. Theoretical Models and Simulations for Polymer Chains. In Physical Properties of Polymers Handbook. 2nd ed. Edited by Mark, J.E.. New York, NY: Springer Verlag.
  • Sen,Taner,Z; Cheng,Haitao; Kloczkowski,Andrzej; Jernigan,Robert,L. 2006. A consensus data mining secondary structure prediction by combining GOR V and fragment database mining.  PROTEIN SCIENCE. Vol. 15, no. 11. (November): 2499-2506.
  • Sen, T. Z.; Kloczkowski; Jernigan, R. L. 2006. A DNA-centric look at protein-DNA complexes.  Structure. Vol. 14, no. September: 1341-1344.
  • Sen,Taner,Z; Kloczkowski,Andrzej; Jernigan,Robert,L. 2006. Functional clustering of yeast proteins from the protein-protein interaction network.  BMC BIOINFORMATICS. Vol. 7, no. July: e355.
  • Sen,Taner,Z; Feng,Yaping; Garcia,John,V; Kloczkowski,Andrzej; Jernigan,Robert,L. 2006. The extent of cooperativity of protein motions observed with elastic network models is similar for atomic and coarser-grained models.  JOURNAL OF CHEMICAL THEORY AND COMPUTATION. Vol. 2, no. 3. (May): 696-704.
  • Sharaf,M,A; Kloczkowski,A; Sen,T,Z; Jacob,K,I; Mark,J,E. 2006. Filler-induced deformations of amorphous polyethylene chains. The effects of the deformations on elastomeric properties, and some comparisons with experiments.  EUROPEAN POLYMER JOURNAL. Vol. 42, no. 4. (April): 796-806.
  • Sharaf,Mohammed,A; Kloczkowski,Andrzej; Sen,Taner,Z; Jacob,Karl,I; Mark,James,E. 2006. Molecular modeling of matrix chain deformation in nanofiber filled composites.  COLLOID AND POLYMER SCIENCE. Vol. 284, no. 7. (April): 700-709.
  • Plewczynski,D; Tkacz,A; Wyrwicz,L; Godzik,A; Kloczkowski,A; Rychlewski,L. 2006. Support-vector-machine classification of linear functional motifs in proteins.  JOURNAL OF MOLECULAR MODELING. Vol. 12, no. 4. (March): 453-461.
  • Plewczynski,D; Jaroszewski,L; Godzik,A; Kloczkowski,A; Rychlewski,L. 2005. Molecular modeling of phosphorylation sites in proteins using a database of local structure segments.  JOURNAL OF MOLECULAR MODELING. Vol. 11, no. 6. (November): 431-438.
  • Mark,J,E; Abou-Hussein,R; Sen,T,Z; Kloczkowski,A. 2005. Some simulations on filler reinforcement in elastomers.  POLYMER. Vol. 46, no. 21. (October): 8894-8904.
  • Sen,T,Z; Sharaf,M,A; Mark,J,E; Kloczkowski,A. 2005. Modeling the elastomeric properties of stereoregular polypropylenes in nanocomposites with spherical fillers.  POLYMER. Vol. 46, no. 18. (August): 7301-7308.
  • Sen,T,Z; Jernigan,R,L; Garnier,J; Kloczkowski,A. 2005. GOR V server for protein secondary structure prediction.  BIOINFORMATICS. Vol. 21, no. 11. (June): 2787-2788.
  • Fernandez A.; Tawfik, D.S.; Berkhout, B.; Sanders, R.W.; Kloczkowski, A.; Sen, T.Z; Jernigan R.L. 2005. Protein promiscuity: Drug resistance and native functions - HIV-1 case.  Journal of Biomolecular Structure and Dynamics. Vol. 22, no. June: 615-624.
  • Cheng,H,T; Sen,T,Z; Kloczkowski,A; Margaritis,D; Jernigan,R,L. 2005. Prediction of protein secondary structure by mining structural fragment database.  POLYMER. Vol. 46, no. 12. (May): 4314-4321.
  • Kloczkowski,A; Sen,T,Z; Sharaf,M,A. 2005. The largest eigenvalue method for stereo-regular vinyl chains.  POLYMER. Vol. 46, no. 12. (May): 4373-4383.
  • Pokarowski,P; Kloczkowski,A; Jernigan,R,L; Kothari,N,S; Pokarowska,M; Kolinski,A. 2005. Inferring ideal amino acid interaction forms from statistical protein contact potentials.  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. Vol. 59, no. 1. (April): 49-57.
  • Sen,T,Z; Kloczkowski,A; Jernigan,R,L; Yan,C,H; Honavar,V; Ho,K,M; Wang,C,Z; Ihm,Y; Cao,H,B; Gu,X; Dobbs,D. 2004. Predicting binding sites of hydrolase-inhibitor complexes by combining several methods.  BMC BIOINFORMATICS. Vol. 5, no. December: e205.
  • Kloczkowski,A; Sen,T,Z; Jernigan,R,L. 2004. The transfer matrix method for lattice proteins - an application with cooperative interactions.  POLYMER. Vol. 45, no. 2. (January): 707-716.
  • Kloczkowski,A; Jernigan,R,L. 2004. Protein Conformational Computations-special issue of Polymer.  POLYMER. Vol. 45, no. 2. (January): 507-507.
  • Bagci,Z; Kloczkowski,A; Jernigan,R,L; Bahar,I. 2003. The origin and extent of coarse-grained regularities in protein internal packing.  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. Vol. 53, no. 1. (October): 56-67.
  • Kloczkowski,A; Sharaf,M,A. 2003. Largest eigenvalue method for stereo-regular vinyl chains. In 225th National Meeting of the American-Chemical-Society
  • Sharaf,M,A; Kloczkowski,A; Jacob,K; Mark,J,E. 2003. Filler-induced deformations of polyethylene chains: Comparisons with other simulations and neutron scattering experiments. In 225th National Meeting of the American-Chemical-Society
  • Kloczkowski, A.; Jernigan, R.L. 2002. Loop Folds in Proteins and Evolutionary Conservation of Folding Nuclei.  Journal of Biomolecular Structure & Dynamics. Vol. 20, no. December: 323-325.
  • Kloczkowski,A; Ting,T,L; Jernigan,R,L; Garnier,J. 2002. Combining the GOR V algorithm with evolutionary information for protein secondary structure prediction from amino acid sequence.  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. Vol. 49, no. 2. (November): 154-166.
  • Kloczkowski,A; Erman,B; Mark,J,E. 2002. Effect of non-Gaussian chains on fluctuations of junctions in bimodal networks.  POLYMER. Vol. 43, no. 8. (April): 2569-2574.
  • Kloczkowski,A. 2002. Application of statistical mechanics to the analysis of various physical properties of elastomeric networks - a review.  POLYMER. Vol. 43, no. 4. (February): 1503-1525.
  • Kloczkowski,A; Ting,K,L; Jernigan,R,L; Garnier,J. 2002. Protein secondary structure prediction based on the GOR algorithm incorporating multiple sequence alignment information.  POLYMER. Vol. 43, no. 2. (January): 441-449.
  • View a list of Dr. Kloczkowski's publications at www.mathmed.org/#Kloczkowski_pubs
  • Sharaf,M,A; Kloczkowski,A; Mark,J,E. 2001. Monte Carlo simulations on reinforcement of an elastomer by oriented prolate particles.  COMPUTATIONAL AND THEORETICAL POLYMER SCIENCE. Vol. 11, no. 4. (January): 251-262.
  • Kloczkowski,A; Jernigan,R,L. 1999. Transfer matrix method for compact protein lattice conformations.
  • Kloczkowski,A; Jernigan,R,L. 1999. Contacts between segments in the random-flight model of polymer chains.  COMPUTATIONAL AND THEORETICAL POLYMER SCIENCE. Vol. 9, no. 3-4. (January): 285-294.
  • Kloczkowski,A; Jernigan,R,L. 1998. Transfer matrix method for enumeration ansi generation of compact self-avoiding walks. 1. Square lattices.  JOURNAL OF CHEMICAL PHYSICS. Vol. 109, no. 12. (September): 5134-5146.
  • Kloczkowski,A; Jernigan,R,L. 1998. Transfer matrix method for enumeration and generation of compact self-avoiding walks. II. Cubic lattice.  JOURNAL OF CHEMICAL PHYSICS. Vol. 109, no. 12. (September): 5147-5159.
  • Zhao,W,Y; Kloczkowski,A; Mark,J,E; Erman,B. 1998. Novel high-performance materials from starch. 1. Factors influencing the lyotropic liquid crystallinity of some starch ethers.  CHEMISTRY OF MATERIALS. Vol. 10, no. 3. (March): 784-793.
  • Zhao,W,Y; Kloczkowski,A; Mark,J,E; Erman,B. 1998. Novel high-performance materials from starch. 2. Orientation and mechanical properties of lightly cross-linked starch-ether films.  CHEMISTRY OF MATERIALS. Vol. 10, no. 3. (March): 794-803.
  • Zhao,W,Y; Kloczkowski,A; Mark,J,E; Erman,B. 1998. Novel high-performance materials from starch. 3. Influence of degree of substitution and amylose/amylopectin ratio on performance.  CHEMISTRY OF MATERIALS. Vol. 10, no. 3. (March): 804-811.
  • Kloczkowski,A; Jernigan,R,L. 1997. Efficient method to count and generate compact protein lattice conformations.  MACROMOLECULES. Vol. 30, no. 21. (October): 6691-6694.
  • Jernigan,R,L; Bahar,I; Flatow,D; Raghunathan,G; Kloczkowski,A. 1997. Proteins: Diversities and similarities.
  • Fakirov,S; Sarac,Z; Anbar,T; Boz,B; Bahar,I; Evstatiev,M; Apostolov,A,A; Mark,J,E; Kloczkowski,A. 1997. Mechanical properties and transition temperatures of crosslinked-oriented gelatin .2. Effect of orientation and water content on transition temperatures.  COLLOID AND POLYMER SCIENCE. Vol. 275, no. 4. (April): 307-314.
  • Kloczkowski,A; Jernigan,R,L. 1997. New methods to enumerate conformations of compact proteins.
  • Kloczkowski,A; Jernigan,R,L. 1997. Computer generation and enumeration of compact self-avoiding walks within simple geometries on lattices.  COMPUTATIONAL AND THEORETICAL POLYMER SCIENCE. Vol. 7, no. 3-4. (January): 163-173.
  • Zhao, W.; Kloczkowski, A.; Mark, J.E.; Erman, B.; Bahar, I. 1996. Oriented Gelatine - A New Source for High-Performance Materials.  Journal of Macromolecular Science, Part A: Pure and Applied Chemistry. Vol. 33, no. September: 525-540.
  • Yuan,Q,W; Kloczkowski,A; Mark,J,E; Sharaf,M,A. 1996. Simulations on the reinforcement of poly(dimethylsiloxane) elastomers by randomly distributed filler particles.  JOURNAL OF POLYMER SCIENCE PART B-POLYMER PHYSICS. Vol. 34, no. 9. (July): 1647-1657.
  • Fakirov,S; Sarac,Z; Anbar,T; Boz,B; Bahar,I; Evstatiev,M; Apostolov,A,A; Mark,J,E; Kloczkowski,A. 1996. Mechanical properties and transition temperatures of crosslinked oriented gelatin .1. Static and dynamic mechanical properties of cross-linked gelatin.  COLLOID AND POLYMER SCIENCE. Vol. 274, no. 4. (April): 334-341.
  • Zhao,W,Y; Kloczkowski,A; Mark,J,E; Erman,B; Bahar,I. 1996. Main-chain lyotropic liquid-crystalline elastomers .2. Orientation and mechanical properties of polyisocyanate films.  MACROMOLECULES. Vol. 29, no. 8. (April): 2805-2812.
  • Zhao,W,Y; Kloczkowski,A; Mark,J,E; Erman,B; Bahar,I. 1996. Main-chain lyotropic liquid-crystalline elastomers .1. Syntheses of cross-linked polyisocyanate gels acquiring liquid-crystalline behavior in the swollen state.  MACROMOLECULES. Vol. 29, no. 8. (April): 2796-2804.
  • Apostolov,A,A; Evstatiev,M; Fakirov,S; Kloczkowski,A; Mark,J,E. 1996. Structures and mechanical properties of zone-drawn zone-annealed blends of cocrystallizing poly(butylene terephthalate) and a poly(ether ester).  JOURNAL OF APPLIED POLYMER SCIENCE. Vol. 59, no. 11. (March): 1667-1675.
  • Zhao,W,Y; Kloczkowski,A; Mark,J,E; Erman,B; Bahar,I. 1996. Make tough plastic films from gelatin.  CHEMTECH. Vol. 26, no. 3. (March): 32-38.
  • Zhao,W,Y; Kloczkowski,A; Mark,J,E; Erman,B; Bahar,I. 1996. Oriented gelatin - A new source for high-performance materials. In ACS Symposium on Biopolymers as Advanced Materials
  • Kloczkowski, A. 1996. Theoretical Models for Polymer Chains. In Physical Properties of Polymers Handbook. 1st ed. Edited by Mark, J.E.. Woodbury, NY: AIP Press.
  • Kloczkowski, A. 1996. Magnetic, Piezoelectric, Pyroelectric and Ferroelectric Properties. In Physical Properties of Polymers Handbook. 1st ed. Edited by Mark, J.E.. Woodbury, NY: AIP Press.
  • Sharaf,M,A; Kloczkowski,A; Mark,J,E. 1995. DYNAMIC-MECHANICAL LOSSES IN FILLED POLY(DIMETHYLSILOXANE) NETWORKS.  RUBBER CHEMISTRY AND TECHNOLOGY. Vol. 68, no. 4. (September): 601-608.
  • Yuan,Q,W; Kloczkowski,A; Sharaf,M,A; Mark,J,E. 1995. SIMULATIONS ON THE REINFORCEMENT OF POLY(DIMETHYLSILOXANE) ELASTOMERS BY RANDOMLY-DISTRIBUTED FILLER PARTICLES.
  • Sharaf,M,A; Kloczkowski,A; Mark,J,E. 1995. MONTE-CARLO SIMULATION OF ANISOTROPY OF DISTRIBUTION-FUNCTIONS AND CHARACTERIZATION OF ELASTIC BEHAVIOR OF POLY(ETHYLENE) NETWORKS - CHAINS IN A MATRIX OF OBLATE FILLER PARTICLES ARRANGED ON A CUBIC LATTICE.
  • Kloczkowski,A; Mark,J,E; Erman,B. 1995. A DIFFUSED-CONSTRAINT THEORY FOR THE ELASTICITY OF AMORPHOUS POLYMER NETWORKS .1. FUNDAMENTALS AND STRESS-STRAIN ISOTHERMS IN ELONGATION.  MACROMOLECULES. Vol. 28, no. 14. (July): 5089-5096.
  • Yang,Y; Kloczkowski,A; Mark,J,E; Erman,B; Bahar,I. 1995. THEORETICAL-ANALYSIS OF THE ELASTOMERIC AND OPTICAL-PROPERTIES OF NETWORKS OF SEMIRIGID CHAINS IN THE SWOLLEN STATE.  MACROMOLECULES. Vol. 28, no. 14. (July): 4920-4926.
  • Yang,Y; Kloczkowski,A; Mark,J,E; Erman,B; Bahar,I. 1995. EXPERIMENTAL STUDIES OF ELASTOMERIC AND OPTICAL-PROPERTIES, AND STRAIN-INDUCED LIQUID-CRYSTALLINE PHASE-TRANSITIONS, IN DEFORMED (HYDROXYPROPYL)CELLULOSE NETWORKS IN THE SWOLLEN STATE.  MACROMOLECULES. Vol. 28, no. 14. (July): 4927-4931.
  • Kloczkowski,A; Mark,J,E; Erman,B. 1995. A DIFFUSED-CONSTRAINT THEORY FOR THE ELASTICITY OF AMORPHOUS POLYMER NETWORKS .2. MOLECULAR DEFORMATION TENSORS AND STRAIN BIREFRINGENCE.  COMPUTATIONAL POLYMER SCIENCE. Vol. 5, no. 1-2. (March): 37-45.
  • Kloczkowski,A; Mark,J,E; Erman,B. 1995. A SIMPLE DERIVATION OF THE EXPONENT-GAMMA FOR GAUSSIAN CHAINS WITH EXCLUDED-VOLUME.  MACROMOLECULAR THEORY AND SIMULATIONS. Vol. 4, no. 2. (March): 245-252.
  • Kloczkowski, A.; Mark, J.E.; Erman, B. 1995. A Diffused-Constraint Theory for the Elasticity of Amorphous Networks. 2. Molecular Deformation Tensor and Strain Birefringence.  Computational Polymer Science. Vol. 5, no. February: 37-45.
  • Kloczkowski,A; Sharaf,M,A; Mark,J,E. 1994. COMPUTER-SIMULATIONS ON FILLED ELASTOMERIC MATERIALS.  CHEMICAL ENGINEERING SCIENCE. Vol. 49, no. 17. (September): 2889-2897.
  • Madkour, T.M.; Kloczkowski, A.; Mark, J.E. 1994. Sequence Distributions and Crystallinity in Random and Semi-Blocky Polysiloxane Copolymers. III. Analytical Theory and Some Comparison with the Simulation Results.  Computational Polymer Science. Vol. 4, no. June: 95-100.
  • Mark,J,E; Yang,Y; Kloczkowski,A; Erman,B; Bahar,I. 1994. A NOVEL ORIENTATION TECHNIQUE FOR SEMIRIGID POLYMERS .2. MECHANICAL-PROPERTIES OF CELLULOSE-ACETATE AND HYDROXYPROPYLCELLULOSE FILMS.  COLLOID AND POLYMER SCIENCE. Vol. 272, no. 4. (April): 393-399.
  • Yang,Y; Kloczkowski,A; Mark,J,E; Erman,B; Bahar,I. 1994. A NOVEL ORIENTATION TECHNIQUE FOR SEMIRIGID POLYMERS .1. PREPARATION OF CROSS-LINKED CELLULOSE-ACETATE AND HYDROXYPROPYLCELLULOSE FILMS HAVING PERMANENT ANISOTROPY IN THE SWOLLEN STATE.  COLLOID AND POLYMER SCIENCE. Vol. 272, no. 3. (March): 284-292.
  • Sharaf, M.A.; Kloczkowski, A.; Mark, J.E. 1994. Simulations on the Reinforcement of Elastomeric Poly(Dimethylsiloxane) by Filler Particles Arranged on a Cubic Lattice.  Computational Polymer Science. Vol. 4, no. March: 29-39.
  • Apostolov,A,A; Fakirov,S; Sezen,B; Bahar,I; Kloczkowski,A. 1994. STRUCTURAL AND MECHANICAL STUDIES OF A BLEND OF POLY(BUTYLENE TEREPHTHALATE) AND POLY(ETHER ESTER) BASED ON POLY(BUTYLENE TEREPHTHALATE) AND POLY(ETHYLENE GLYCOL).  POLYMER. Vol. 35, no. 24. (January): 5247-5255.
  • Kloczkowski,A; Sharaf,M,A; Mark,J,E. 1993. MOLECULAR THEORY OF RUBBER ELASTICITY OF FILLED POLYMERS.
  • Yang,Y; Kloczkowski,A; Mark,J,E; Erman,B; Bahar,I. 1993. ELASTIC AND OPTICAL-PROPERTIES OF DEFORMED SWOLLEN NETWORKS OF SEMIRIGID CHAINS.
  • Yang,Y; Kloczkowski,A; Mark,J,E; Erman,B; Bahar,I. 1993. ORIENTATION AND STRAIN-INDUCED LIQUID-CRYSTALLINE PHASE-TRANSITION OF NETWORKS OF SEMIRIGID CHAINS.
  • Kloczkowski, A.; Sharaf, M.A.; Mark, J.E. 1993. Molecular Theory for Reinforcement in Filled Polymers.  Computational Polymer Science. Vol. 3, no. March: 39-45.
  • Erman, B.; Bahar, I.; Kloczkowski, A.; Mark, J.E. 1992. Networks with Semi-Flexible Chains. In Synthesis, Characterization and Theory of Polymeric Networks and Gels. Edited by Aharoni, S.M.. New York, NY: Plenum Press.
  • Trohalaki, S.; Kloczkowski, A.; Mark, J.E.; Roe, R.J.; Rigby, D. 1992. Molecular Dynamics Simulation of Small-Molecule Diffusion in Polyethylene.  Computational Polymer Science. Vol. 2, no. December: 147-151.
  • Erman, B.; Bahar, I.; Yang, Y.; Kloczkowski, A.; Mark, J.E. 1992. Novel Orientation Techniques for the Preparation of High-Performance Materials from Semi-Flexible Chains Such as Cellulosics. In Polymer Blends, Solutions and Interfaces (Studies in Polymer Science). Edited by Noda, I.; Rubingh, D.N.. Amsterdam: Elsevier Science.
  • Kloczkowski, A.; Mark, J.E.; Sharaf, M.A.; Erman, B. 1992. Theory of Strain-Induced Crystallization in Real Elastomeric Networks. In Synthesis, Characterization and Theory of Polymeric Networks and Gels. Edited by Aharoni, S.M.. New York, NY: Plenum Press.
  • Kloczkowski, A.; Mark, J.E.; Erman, B.; Bahar, I. 1992. Isotropic-Nematic Phase Transitions in Polymer Networks Deformed in the Dry and Swollen States. In Polymer Blends, Solutions and Interfaces (Studies in Polymer Science). Edited by Noda, I.; Rubingh, D.N.,. Amsterdam: Elsevier Science.
  • Sharaf, M.A.; Kloczkowski, A.; Mark, J.E.; Erman, B. 1992. Networks Undergoing Strain Induced Crystallization. Analysis by the Constrained Junction Model.  Computational Polymer Science. Vol. 2, no. June: e84.
  • Erman,B; Bahar,I; Kloczkowski,A; Mark,J,E. 1992. NETWORKS WITH SEMIFLEXIBLE CHAINS.
  • Kloczkowski,A; Mark,J,E; Erman,B. 1992. CORRELATIONS AMONG CHAINS ALONG A CROSS-LINKED PATH IN A PHANTOM NETWORK AND THEIR CHARACTERIZATION BY SANS.  MACROMOLECULES. Vol. 25, no. 9. (April): 2455-2458.
  • Sharaf,M,A; Kloczkowski,A; Mark,J,E. 1992. NETWORKS UNDERGOING STRAIN-INDUCED CRYSTALLIZATION - ANALYSIS BY THE CONSTRAINED-JUNCTION MODEL.
  • Trohalaki,S; Kloczkowski,A; Mark,J,E; Roe,R,J. 1992. MOLECULAR-DYNAMICS SIMULATIONS OF SMALL-MOLECULE DIFFUSION IN POLYETHYLENE.
  • Madkour,T; Kloczkowski,A; Mark,J,E; Roe,R,J. 1992. MOLECULAR-DYNAMICS INVESTIGATIONS INTO THE HIGH PERMEABILITY OF SILOXANE POLYMERS. In SYMP ON COMPUTATIONAL METHODS IN MATERIALS SCIENCE
  • Kloczkowski,A; Mark,J,E; Erman,B; Bahar,I. 1992. ISOTROPIC-NEMATIC PHASE-TRANSITIONS IN POLYMER NETWORKS DEFORMED IN THE DRY AND SWOLLEN STATES. In SYMP ON POLYMER SOLUTIONS, BLENDS, AND INTERFACES, AT THE 202ND NATIONAL MEETING OF THE AMERICAN CHEMICAL SOC
  • Kloczkowski,A; Mark,J,E; Sharaf,M,A; Erman,B. 1992. THEORY OF STRAIN-INDUCED CRYSTALLIZATION IN REAL ELASTOMERIC NETWORKS. In SYMP ON SYNTHESIS, CHARACTERIZATION, AND THEORY OF POLYMERIC NETWORKS AND GELS, AT THE 203RD MEETING OF THE AMERICAN CHEMICAL SOC
  • Erman,B; Bahar,I; Yang,Y; Kloczkowski,A; Mark,JE. 1992. NOVEL ORIENTATION TECHNIQUES FOR THE PREPARATION OF HIGH-PERFORMANCE MATERIALS FROM SEMIFLEXIBLE POLYMERS SUCH AS THE CELLULOSICS. In SYMP ON POLYMER SOLUTIONS, BLENDS, AND INTERFACES, AT THE 202ND NATIONAL MEETING OF THE AMERICAN CHEMICAL SOC
  • Erman, B.; Bahar, I.; Kloczkowski, A.; Mark, J.E. 1992. Stress, Strain and Segmental Orientation in Networks with Semi-Rigid Chains. In Elastomeric Polymer Networks. Edited by Mark, J.E.; Erman, B.. Englewood Cliffs, NJ: Prentice Hall.
  • Kloczkowski, A.; Mark, J.E.; Erman, B. 1992. Application of the James-Guth Model in Modern Theories of Neutron Scattering from Polymer Networks.  Computational Polymer Science. Vol. 2, no. January: 8-31.
  • Erman,B; Bahar,I; Kloczkowski,A; Mark,J,E. 1992. NETWORKS WITH SEMIFLEXIBLE CHAINS. In SYMP ON SYNTHESIS, CHARACTERIZATION, AND THEORY OF POLYMERIC NETWORKS AND GELS, AT THE 203RD MEETING OF THE AMERICAN CHEMICAL SOC
  • Kloczkowski,A; Mark,J,E; Erman,B; Eichinger,B,E. 1991. STATISTICAL-MECHANICS OF RUBBER ELASTICITY - COMMENT.  JOURNAL OF CHEMICAL PHYSICS. Vol. 95, no. 9. (November): 7015-7016.
  • Erman,B; Bahar,I; Yang,Y; Kloczkowski,A; Mark,J,E. 1991. NOVEL ORIENTATION TECHNIQUES FOR THE PREPARATION OF HIGH-PERFORMANCE MATERIALS FROM SEMIFLEXIBLE POLYMERS SUCH AS THE CELLULOSICS.
  • Kloczkowski,A; Mark,J,E; Erman,B; Bahar,I. 1991. A LATTICE MODEL FOR SEGMENTAL ORIENTATION IN DEFORMED POLYMER NETWORKS - CHARACTERIZATION OF STRESS-STRAIN RELATIONSHIPS AND PHASE-TRANSITIONS FOR NETWORKS OF SEMIRIGID CHAINS.
  • Kloczkowski,A; Mark,J,E; Erman,B. 1991. FLUCTUATIONS, CORRELATIONS, AND SMALL-ANGLE NEUTRON-SCATTERING FROM END-LINKED GAUSSIAN CHAINS IN REGULAR BIMODAL NETWORKS.  MACROMOLECULES. Vol. 24, no. 11. (May): 3266-3275.
  • Trohalaki, S.; Kloczkowski, A.; Mark, J.E.; Rigby, D.; Roe, R.J. 1991. Estimation of Diffusion Coefficients for Small Molecular Penetrants in Amorphous Polyethylene. In Computer Simulation of Polymers. Edited by Roe, R.J.. Englewood Cliffs, NJ: Prentice Hall.
  • Bahar,I; Erman,B; Kloczkowski,A; Mark,J,E. 1990. A LATTICE MODEL FOR SEGMENTAL ORIENTATION IN DEFORMED POLYMERIC NETWORKS .2. EFFECT OF CHAIN STIFFNESS AND THERMOTROPIC INTERACTIONS.  MACROMOLECULES. Vol. 23, no. 26. (December): 5341-5346.
  • Erman,B; Bahar,I; Kloczkowski,A; Mark,J,E. 1990. LATTICE MODEL FOR SEGMENTAL ORIENTATION IN DEFORMED POLYMERIC NETWORKS .1. CONTRIBUTION OF INTERMOLECULAR CORRELATIONS.  MACROMOLECULES. Vol. 23, no. 26. (December): 5335-5340.
  • Kloczkowski,A; Mark,J,E; Erman,B. 1990. ON THE FLORY-RONCA THEORY OF SYSTEMS OF RODLIKE PARTICLES.  MACROMOLECULES. Vol. 23, no. 23. (November): 5035-5037.
  • Erman,B; Bahar,I; Kloczkowski,A; Mark,J,E. 1990. A LATTICE MODEL FOR SEGMENTAL ORIENTATION IN DEFORMED POLYMERIC NETWORKS.
  • Kloczkowski,A; Mark,J,E; FRISCH,H,L. 1990. THE RELAXATION SPECTRUM FOR GAUSSIAN NETWORKS.  MACROMOLECULES. Vol. 23, no. 14. (July): 3481-3490.
  • Kloczkowski,A; Mark,J,E; Bahar,I; Erman,B. 1990. A CLOSED FORM SOLUTION FOR THE INTERNAL DYNAMICS OF POLYMER-CHAINS .1. BONDS WITH INDEPENDENT ROTATIONAL POTENTIALS.  JOURNAL OF CHEMICAL PHYSICS. Vol. 92, no. 7. (April): 4513-4518.
  • Kloczkowski,A; Mark,J,E; Erman,B. 1990. NEUTRON-SCATTERING FROM ELASTOMERIC NETWORKS .2. AN ALTERNATIVE PHANTOM NETWORK MODEL.  MACROMOLECULES. Vol. 23, no. 4. (February): 1222-1224.
  • Kloczkowski,A; Mark,J,E; Erman,B. 1989. SMALL-ANGLE NEUTRON-SCATTERING FROM ELASTOMERIC NETWORKS .1. CALCULATED SCATTERING FROM A PATH CONTAINING SEVERAL JUNCTIONS IN THE JAMES-GUTH MODEL.  MACROMOLECULES. Vol. 22, no. 12. (December): 4502-4506.
  • Trohalaki,S; Rigby,D; Kloczkowski,A; Mark,J,E; Roe,R,J. 1989. ESTIMATION OF DIFFUSION-COEFFICIENTS FOR CO2 IN POLYETHYLENE BY MOLECULAR-DYNAMICS SIMULATION.
  • Kloczkowski,A; Mark,J,E. 1989. ON THE PACE-DATYNER THEORY OF DIFFUSION OF SMALL MOLECULES THROUGH POLYMERS.  JOURNAL OF POLYMER SCIENCE PART B-POLYMER PHYSICS. Vol. 27, no. 8. (July): 1663-1674.
  • Samborski,A; Kloczkowski,A. 1989. QUADRUPOLES ON THE TRIANGULAR TWO-DIMENSIONAL LATTICE - INFLUENCE OF THE EXTERNAL-FIELD OF GRAPHITE.  LANGMUIR. Vol. 5, no. 4. (July): 1071-1074.
  • Kloczkowski,A; Mark,J,E; Erman,B. 1989. CHAIN DIMENSIONS AND FLUCTUATIONS IN RANDOM ELASTOMERIC NETWORKS .1. PHANTOM GAUSSIAN NETWORKS IN THE UNDEFORMED STATE.  MACROMOLECULES. Vol. 22, no. 3. (March): 1423-1432.
  • Erman,B; Kloczkowski,A; Mark,J,E. 1989. CHAIN DIMENSIONS AND FLUCTUATIONS IN RANDOM ELASTOMERIC NETWORKS .2. DEPENDENCE OF CHAIN DIMENSIONS AND FLUCTUATIONS ON MACROSCOPIC STRAIN.  MACROMOLECULES. Vol. 22, no. 3. (March): 1432-1437.
  • Kloczkowski,A; Samborski,A. 1988. QUADRUPOLES ON THE TRIANGULAR TWO-DIMENSIONAL LATTICE - A SIMPLE-MODEL OF N-2 ON GRAPHITE HERRINGBONE TRANSITION.  LANGMUIR. Vol. 4, no. 4. (July): 817-821.
  • Kloczkowski,A; Samborski,A. 1988. FREEZING OF THE HARD-CORE YUKAWA FLUID.  JOURNAL OF CHEMICAL PHYSICS. Vol. 88, no. 9. (May): 5834-5839.
  • Kloczkowski,A; Luckhurst,G,R. 1988. TRANSITION-TEMPERATURES OF BINARY NEMATIC MIXTURES PREDICTED BY THE HUMPHRIES-JAMES-LUCKHURST THEORY.  JOURNAL OF THE CHEMICAL SOCIETY-FARADAY TRANSACTIONS II. Vol. 84, no. February: 155-159.
  • Kloczkowski,A; Luckhurst,G,R; Phippen,R,W. 1988. A VISUAL REPRESENTATION FOR THE SHAPES OF FLEXIBLE MESOGENIC MOLECULES.  LIQUID CRYSTALS. Vol. 3, no. 2. (February): 185-194.
  • Kloczkowski,A; Luckhurst,G,R. 1988. ON THE RELATIONSHIP OF THE NEMATIC-ISOTROPIC TRANSITION-TEMPERATURE OF AN OLIGOMER TO THAT OF ITS CONSTITUENT UNITS.  LIQUID CRYSTALS. Vol. 3, no. 1. (January): 95-99.
  • Kloczkowski,A; Stecki,J. 1985. A MOLECULAR-MODEL FOR THE SMECTIC A PHASE.  MOLECULAR PHYSICS. Vol. 55, no. 3. (January): 689-700.
  • ESCHER,C; Kloczkowski,A; Ross,J. 1985. INCREASED POWER OUTPUT AND RESONANCE EFFECTS IN A THERMAL ENGINE DRIVEN BY A 1ST OR 2ND ORDER MODEL REACTION.  JOURNAL OF CHEMICAL PHYSICS. Vol. 82, no. 5. (January): 2457-2465.
  • Kloczkowski,A; Stecki,J. 1985. ON THE TRICRITICAL POINTS IN THE MCMILLAN MODEL OF LIQUID-CRYSTALS.  MOLECULAR PHYSICS. Vol. 55, no. 6. (January): 1223-1232.
  • FRISCH,H,L; Kloczkowski,A. 1984. A SIMPLE-MODEL FOR PROTECTION AGAINST ENVIRONMENTAL-POLLUTION IN REACTIVE COATING FILMS.  JOURNAL OF COLLOID AND INTERFACE SCIENCE. Vol. 99, no. 2. (January): 404-419.
  • LIPSZYC,K; Kloczkowski,A. 1983. THE ISOTROPIC-NEMATIC PHASE-TRANSITION AS THE BIFURCATION OF SOLUTIONS OF THE NON-LINEAR INTEGRAL-EQUATION.  ACTA PHYSICA POLONICA A. Vol. 63, no. 6. (January): 805-822.
  • Kloczkowski,A; Stecki,J. 1982. STABILITY IN THE MEAN SPHERICAL MODEL FOR HARD-SPHERES WITH DIPOLE-MOMENTS.  ACTA PHYSICA POLONICA A. Vol. 61, no. 5. (January): 493-496.
  • Kloczkowski,A; Stecki,J. 1982. ON THE MEAN SPHERICAL MODEL FOR LIQUID-CRYSTALS.  MOLECULAR PHYSICS. Vol. 46, no. 1. (January): 13-19.
  • Stecki,J; Kloczkowski,A. 1981. ON THE STABILITY OF THE ISOTROPIC-PHASE TOWARDS NEMATIC AND SMECTIC-A FORMATION.  MOLECULAR PHYSICS. Vol. 42, no. 1. (January): 51-63.
  • Stecki, J; Kloczkowski, A. 1979. On the Stability of the Orientational Distribution of Molecules.  Journal de Physique (Paris). Vol. C3, no. April: 360-362.
  • Stecki, J.; Kloczkowski, A. 1978. Statistical Mechanics of Liquid-Crystalline Ordering.  ZfI Mitteilungen. Vol. 13, no. September: e104.
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